Transcript: ENST00000370966.5 DEPDC1-001

Description

DEP domain containing 1 [Source:HGNC Symbol;Acc:22949]

Gene Synonyms

DEP.8, DEPDC1-V2, DEPDC1A, FLJ20354, SDP35

Location

About this transcript

This transcript has 11 exons, is annotated with 13 domains and features, is associated with 9594 variant alleles and maps to 657 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000456315.2	DEPDC1-002	5331	811aa	ENSP00000412292.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44159	E9PL61 Q5TB30	NM_001114120.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370966.5	DEPDC1-001	4586	527aa	ENSP00000360005.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS644	E9PL61 Q5TB30	NM_017779.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000525124.1	DEPDC1-004	582	34aa	ENSP00000431477.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PL61	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000489862.1	DEPDC1-003	1613	308aa	ENSP00000436464.1	Nonsense mediated decay		E9PL61 Q69YG3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000488146.1	DEPDC1-005	2658	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 4,586 bps, Translation length: 527 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5TB30

CCDS

This transcript is a member of the Human CCDS set: CCDS644

Version

ENST00000370966.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000025513 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.