Transcript: ENST00000589659.1 SLC7A9-005

Description

solute carrier family 7 (amino acid transporter light chain, bo,+ system), member 9 [Source:HGNC Symbol;Acc:11067]

Gene Synonyms

BAT1, CSNU3

Location

Chromosome 19: 33,349,382-33,355,424 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 3103 variant alleles and maps to 153 oligo probes.

Gene

This transcript is a product of gene ENSG00000021488.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000023064.4	SLC7A9-001	1761	487aa	ENSP00000023064.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12425	K7EIF5 P82251	NM_014270.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590341.1	SLC7A9-006	1752	487aa	ENSP00000464822.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12425	K7EIF5 P82251	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000587772.1	SLC7A9-002	1568	487aa	ENSP00000468439.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12425	K7EIF5 P82251	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590465.1	SLC7A9-003	1998	39aa	ENSP00000468076.1	Nonsense mediated decay		K7EKD0	-	-
ENST00000592232.1	SLC7A9-004	1030	39aa	ENSP00000465563.1	Nonsense mediated decay		K7EKD0	-	-
ENST00000589659.1	SLC7A9-005	886	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 886 bps,

Version

ENST00000589659.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000450588 (version 3)

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Transcript: ENST00000589659.1 SLC7A9-005

Summary