Transcript: ENST00000494979.1 MARCO-004

Description

macrophage receptor with collagenous structure [Source:HGNC Symbol;Acc:6895]

Gene Synonyms

SCARA2

Location

About this transcript

This transcript has 2 exons, is associated with 970 variant alleles and maps to 185 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000327097.4	MARCO-001	1838	520aa	ENSP00000318916.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2124	B4DLJ6 B4DW79 C9JKT8 Q4ZG40 Q9UEW3	NM_006770.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541757.1	MARCO-201	1843	442aa	ENSP00000441769.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DW79 C9JKT8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000412481.1	MARCO-003	569	63aa	ENSP00000409192.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JKT8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000494979.1	MARCO-004	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 556 bps,

Version

ENST00000494979.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000330526 (version 1)