Transcript: ENST00000509778.1 XYLT2-004

Description

xylosyltransferase II [Source:HGNC Symbol;Acc:15517]

Gene Synonyms

PXYLT2, XT-II, XT2, xylT-II

Location

Chromosome 17: 48,423,492-48,431,035 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 4 domains and features, is associated with 3297 variant alleles and maps to 75 oligo probes.

Gene

This transcript is a product of gene ENSG00000015532.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000017003.2	XYLT2-001	3507	865aa	ENSP00000017003.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11563	Q9H1B5	NM_022167.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507602.1	XYLT2-002	2107	676aa	ENSP00000426501.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DT06	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000574840.1	XYLT2-007	901	46aa	ENSP00000460517.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L3K2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000509778.1	XYLT2-004	145	45aa	ENSP00000425511.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RCT0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000376550.3	XYLT2-003	3267	639aa	ENSP00000365733.3	Nonsense mediated decay		Q9H1B5	-	-
ENST00000511654.1	XYLT2-005	587	117aa	ENSP00000428350.1	Nonsense mediated decay		H0YB00	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000571021.1	XYLT2-006	2174	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 145 bps, Translation length: 45 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000509778.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000367049 (version 1)

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Transcript: ENST00000509778.1 XYLT2-004

Summary