Transcript: ENST00000549996.1 NR1H4-002

Description

nuclear receptor subfamily 1, group H, member 4 [Source:HGNC Symbol;Acc:7967]

Gene Synonyms

BAR, FXR, HRR-1, HRR1, RIP14

Location

Chromosome 12: 100,867,694-100,957,289 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 17 domains and features, is associated with 36830 variant alleles and maps to 343 oligo probes.

Gene

This transcript is a product of gene ENSG00000012504.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000551379.1	NR1H4-006	1489	486aa	ENSP00000447149.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55876	B7Z423 Q96RI1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548884.1	NR1H4-001	2884	472aa	ENSP00000448506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9078	B6ZGS9 Q96RI1	NM_005123.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392986.3	NR1H4-003	1778	476aa	ENSP00000376712.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55873	F1DAL1 Q96RI1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549996.1	NR1H4-002	1633	425aa	ENSP00000448978.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55874	Q96RI1	NM_001206978.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000188403.7	NR1H4-005	1630	482aa	ENSP00000188403.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55875	Q96RI1	NM_001206993.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546380.1	NR1H4-008	565	45aa	ENSP00000446760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W1M1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000551184.1	NR1H4-007	294	34aa	ENSP00000446861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000321046.5	NR1H4-004	1779	270aa	ENSP00000315442.5	Nonsense mediated decay		G8JLB0	-	-
ENST00000548621.1	NR1H4-009	496	57aa	ENSP00000446584.1	Nonsense mediated decay		F8W656	-	-

Summary

Statistics

Exons: 10, Coding exons: 8, Transcript length: 1,633 bps, Translation length: 425 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96RI1

CCDS

This transcript is a member of the Human CCDS set: CCDS55874

Version

ENST00000549996.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000409137 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000549996.1 NR1H4-002

Summary