Transcript: ENST00000571127.1 YBX2-004

Description

Y box binding protein 2 [Source:HGNC Symbol;Acc:17948]

Gene Synonyms

CONTRIN, CSDA3, DBPC, MSY2

Location

Chromosome 17: 7,196,394-7,197,875 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 751 variant alleles and maps to 83 oligo probes.

Gene

This transcript is a product of gene ENSG00000006047.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000007699.5	YBX2-001	1590	364aa	ENSP00000007699.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11098	Q9Y2T7	NM_015982.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000571464.1	YBX2-007	640	164aa	ENSP00000459587.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000570627.1	YBX2-005	653	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000571485.1	YBX2-003	4553	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000571834.1	YBX2-002	2195	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000571127.1	YBX2-004	791	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570720.1	YBX2-006	606	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 791 bps,

Version

ENST00000571127.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000440191 (version 1)

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Transcript: ENST00000571127.1 YBX2-004

Summary