Description
procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 [Source:HGNC Symbol;Acc:9083]
Gene Synonyms
LH3
Location
Chromosome 7: 100,849,258-100,861,701 reverse strand.
GRCh37:CM000669.1
About this gene
This gene has 16 transcripts (splice variants), 5 paralogues and is associated with 4 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000223127.3 | PLOD3-001 | 2920 | 738aa | ENSP00000223127.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS5715 | C9JIX5 O60568 | NM_001084.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000454310.1 | PLOD3-017 | 1098 | 264aa | ENSP00000407555.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000421736.1 | PLOD3-009 | 809 | 270aa | ENSP00000407908.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000456079.1 | PLOD3-005 | 563 | 75aa | ENSP00000416070.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JIX5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000414785.1 | PLOD3-007 | 539 | 171aa | ENSP00000407551.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JU11 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000424135.1 | PLOD3-008 | 565 | 125aa | ENSP00000404799.1 | Nonsense mediated decay | H7C2A8 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000440925.1 | PLOD3-013 | 536 | 66aa | ENSP00000394045.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000478082.1 | PLOD3-002 | 1585 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000460475.1 | PLOD3-011 | 746 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000487563.1 | PLOD3-016 | 712 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000478264.1 | PLOD3-010 | 663 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000466881.1 | PLOD3-014 | 661 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000460132.1 | PLOD3-015 | 578 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000481461.1 | PLOD3-006 | 564 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000489927.1 | PLOD3-004 | 562 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000463479.1 | PLOD3-012 | 505 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
