Transcript: ENST00000478082.1 PLOD3-002

Description

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 [Source:HGNC Symbol;Acc:9083]

Gene Synonyms

LH3

Location

Chromosome 7: 100,854,845-100,861,275 reverse strand.

About this transcript

This transcript has 11 exons, is associated with 3819 variant alleles and maps to 349 oligo probes.

Gene

This transcript is a product of gene ENSG00000106397.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000223127.3	PLOD3-001	2920	738aa	ENSP00000223127.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5715	C9JIX5 O60568	NM_001084.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454310.1	PLOD3-017	1098	264aa	ENSP00000407555.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000421736.1	PLOD3-009	809	270aa	ENSP00000407908.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000456079.1	PLOD3-005	563	75aa	ENSP00000416070.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JIX5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000414785.1	PLOD3-007	539	171aa	ENSP00000407551.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JU11	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000424135.1	PLOD3-008	565	125aa	ENSP00000404799.1	Nonsense mediated decay		H7C2A8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000440925.1	PLOD3-013	536	66aa	ENSP00000394045.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000478082.1	PLOD3-002	1585	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460475.1	PLOD3-011	746	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487563.1	PLOD3-016	712	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478264.1	PLOD3-010	663	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466881.1	PLOD3-014	661	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460132.1	PLOD3-015	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481461.1	PLOD3-006	564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489927.1	PLOD3-004	562	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463479.1	PLOD3-012	505	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 0, Transcript length: 1,585 bps,

Version

ENST00000478082.1

Type

Retained intron

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000347471 (version 1)

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Recent locations

Transcript: ENST00000478082.1 PLOD3-002

Summary