Description
lysine (K)-specific demethylase 5C [Source:HGNC Symbol;Acc:11114]
Gene Synonyms
DXS1272E, JARID1C, MRXJ, MRXSCJ, MRXSJ, SMCX, XE169
Location
Chromosome X: 53,220,503-53,254,604 reverse strand.
GRCh37:CM000685.1
View alleles of this gene on alternative sequences
About this gene
This gene has 15 transcripts (splice variants), 1 gene allele, 126 orthologues, 10 paralogues and is associated with 86 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000375401.3 | KDM5C-005 | 6031 | 1560aa | ENSP00000364550.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS14351 | P41229 | NM_004187.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000452825.3 | KDM5C-201 | 6096 | 1379aa | ENSP00000445176.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS55417 | P41229 | NM_001146702.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000404049.3 | KDM5C-009 | 5677 | 1559aa | ENSP00000385394.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS65269 | P41229 | NM_001282622.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000375379.3 | KDM5C-006 | 5245 | 1557aa | ENSP00000364528.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | P41229 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000375383.3 | KDM5C-007 | 5122 | 1516aa | ENSP00000364532.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | P41229 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000429877.1 | KDM5C-012 | 870 | 53aa | ENSP00000409757.1 | Nonsense mediated decay | F8WDK1 | - | - | |
| ENST00000428012.1 | KDM5C-013 | 766 | 99aa | ENSP00000407277.1 | Nonsense mediated decay | F8WF56 | - | - | |
| ENST00000349663.6 | KDM5C-011 | 548 | 74aa | ENSP00000344004.6 | Nonsense mediated decay | F8W7H7 | - | - | |
| ENST00000465402.1 | KDM5C-004 | 720 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000495519.1 | KDM5C-002 | 600 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000467093.1 | KDM5C-003 | 446 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000477109.1 | KDM5C-001 | 297 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000497100.1 | KDM5C-008 | 1403 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000481369.1 | KDM5C-010 | 1361 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000497995.1 | KDM5C-014 | 394 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
