Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A [Source:HGNC Symbol;Acc:10729]
Gene Synonyms
CORD10, FLJ12287, RP35, SEMAB, SEMB, SemB
Location
Chromosome 1: 156,117,157-156,147,543 forward strand.
GRCh37:CM000663.1
About this gene
This gene has 15 transcripts (splice variants), 11 paralogues and is associated with 6 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000368285.3 | SEMA4A-001 | 3300 | 761aa | ENSP00000357268.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS1132 | B4DKS5 Q5TCI6 Q5TCJ5 Q5TCJ7 Q9H3S1 Q9HA40 | NM_022367.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000368282.1 | SEMA4A-003 | 3249 | 761aa | ENSP00000357265.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS1132 | B4DKS5 Q5TCI6 Q5TCJ5 Q5TCJ7 Q9H3S1 Q9HA40 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000355014.2 | SEMA4A-002 | 3137 | 761aa | ENSP00000347117.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS1132 | B4DKS5 Q5TCI6 Q5TCJ5 Q5TCJ7 Q9H3S1 Q9HA40 | NM_001193301.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000368286.2 | SEMA4A-201 | 3130 | 629aa | ENSP00000357269.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS53378 | Q9H3S1 Q9HA40 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000368284.1 | SEMA4A-004 | 2981 | 629aa | ENSP00000357267.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS53378 | Q9H3S1 Q9HA40 | NM_001193302.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000435124.1 | SEMA4A-015 | 1057 | 321aa | ENSP00000401391.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q5TCI6 Q5TCJ7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000414683.1 | SEMA4A-007 | 975 | 220aa | ENSP00000399230.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q5TCJ7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000438830.1 | SEMA4A-013 | 897 | 236aa | ENSP00000392865.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q5TCI4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000487358.1 | SEMA4A-006 | 1478 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000485575.1 | SEMA4A-008 | 658 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000484155.1 | SEMA4A-012 | 576 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000470306.1 | SEMA4A-005 | 2405 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000462892.1 | SEMA4A-011 | 993 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000469065.1 | SEMA4A-010 | 608 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000466698.1 | SEMA4A-009 | 465 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
