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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Paralogues
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LOXHD1 ENSG00000167210

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Description

lipoxygenase homology domains 1 [Source:HGNC Symbol;Acc:26521]

Gene Synonyms

DFNB77, FLJ32670, LH2D1

Location

Chromosome 18: 44,056,935-44,236,996 reverse strand.

GRCh37:CM000680.1

About this gene

This gene has 14 transcripts (splice variants) and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000300591.6	LOXHD1-002	3970	1114aa	ENSP00000300591.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45861	C9IYQ1 C9J269 Q8IVV2	NM_001145472.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536736.1	LOXHD1-203	6848	2211aa	ENSP00000444586.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYQ1 C9J269 F5GZB4 J3KRE7	NM_144612.6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441551.2	LOXHD1-013	6226	2067aa	ENSP00000387621.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYQ1 C9J269 H7BZ41 J3QKX9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000398722.4	LOXHD1-201	6054	1947aa	ENSP00000381707.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYQ1 C9J269 Q8IVV2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000582408.1	LOXHD1-014	3755	1100aa	ENSP00000461964.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYQ1 C9J269 J3KRE7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441893.2	LOXHD1-202	3755	1144aa	ENSP00000409062.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYQ1 C9J269 F8WA52 J3KRE7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579038.1	LOXHD1-015	3632	1011aa	ENSP00000463285.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J269 J3QKX9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000398686.4	LOXHD1-008	1958	512aa	ENSP00000381676.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45862	C9J269 Q8IVV2	NM_001145473.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000398705.2	LOXHD1-007	1824	457aa	ENSP00000381692.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54184	C9J269 Q8IVV2	NM_001173129.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000414184.1	LOXHD1-010	675	180aa	ENSP00000392440.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J269	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000452425.1	LOXHD1-009	560	57aa	ENSP00000414278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JMG7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000419859.1	LOXHD1-005	556	23aa	ENSP00000412568.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYQ1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000536111.1	LOXHD1-006	1358	306aa	ENSP00000440060.1	Nonsense mediated decay		F5GXP0	-	-
ENST00000335730.2	LOXHD1-001	4775	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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