Description
splicing factor 1 [Source:HGNC Symbol;Acc:12950]
Gene Synonyms
BBP, D11S636, MBBP, ZCCHC25, ZFM1, ZNF162
Location
Chromosome 11: 64,532,078-64,546,258 reverse strand.
GRCh37:CM000673.1
About this gene
This gene has 20 transcripts (splice variants) and 4 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000377387.1 | SF1-006 | 2947 | 673aa | ENSP00000366604.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS53661 | B4DX42 C9J792 Q14821 Q15637 | NM_001178030.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000377390.3 | SF1-005 | 3470 | 639aa | ENSP00000366607.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS31599 | B4DJU4 C9J792 Q14821 Q15637 | NM_004630.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000334944.5 | SF1-001 | 3094 | 638aa | ENSP00000334414.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8080 | C9J792 Q14821 Q15637 | NM_201995.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000377394.3 | SF1-004 | 2854 | 571aa | ENSP00000366611.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44642 | C9J792 Q14821 Q15637 | NM_201997.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000227503.9 | SF1-002 | 2850 | 548aa | ENSP00000227503.9 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8081 | B4DX42 C9J792 Q14821 Q15637 | NM_201998.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000433274.2 | SF1-016 | 2317 | 613aa | ENSP00000396793.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS53660 | C9J792 Q14821 Q15637 | NM_001178031.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000422298.2 | SF1-201 | 2309 | 433aa | ENSP00000413084.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DX42 Q14821 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000486867.1 | SF1-020 | 875 | 291aa | ENSP00000419062.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H7C561 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000413725.1 | SF1-019 | 843 | 180aa | ENSP00000395927.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | L0R8E5 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000443908.1 | SF1-014 | 767 | 200aa | ENSP00000391198.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H7BZT1 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000432725.1 | SF1-018 | 475 | 62aa | ENSP00000406354.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J792 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000448404.1 | SF1-003 | 2778 | 110aa | ENSP00000407962.1 | Nonsense mediated decay | F8WEV5 | - | - | |
| ENST00000413951.1 | SF1-011 | 623 | 51aa | ENSP00000388470.1 | Nonsense mediated decay | F8WEG7 | - | - | |
| ENST00000489544.1 | SF1-017 | 584 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000496969.1 | SF1-013 | 455 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000463343.1 | SF1-007 | 983 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000477596.1 | SF1-015 | 802 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000482693.1 | SF1-012 | 755 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000486960.1 | SF1-009 | 719 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000472725.1 | SF1-010 | 632 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
