Description
aggrecan [Source:HGNC Symbol;Acc:319]
Gene Synonyms
AGC1, AGCAN, CSPG1, CSPGCP, MSK16, SEDK
Location
Chromosome 15: 89,346,674-89,418,585 forward strand.
GRCh37:CM000677.1
About this gene
This gene has 8 transcripts (splice variants), 8 paralogues and is associated with 8 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000439576.2 | ACAN-201 | 8840 | 2530aa | ENSP00000387356.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS53970 | E7EX88 Q6LE94 | NM_013227.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000559004.1 | ACAN-008 | 7628 | 2492aa | ENSP00000453499.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YM81 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000561243.1 | ACAN-006 | 7593 | 2530aa | ENSP00000453342.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS53970 | E7EX88 Q6LE94 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000352105.7 | ACAN-004 | 7526 | 2431aa | ENSP00000341615.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS53971 | E7ENV9 | NM_001135.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000558207.1 | ACAN-001 | 4159 | 721aa | ENSP00000453003.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q6PID9 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000558704.1 | ACAN-003 | 712 | 156aa | ENSP00000452682.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000560601.1 | ACAN-005 | 679 | 226aa | ENSP00000453581.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q6LE94 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000558604.1 | ACAN-002 | 749 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
