Description
heparan sulfate proteoglycan 2 [Source:HGNC Symbol;Acc:5273]
Gene Synonyms
HSPG, PLC, PRCAN, SJA, SJS, SJS1, perlecan
Location
Chromosome 1: 22,148,738-22,263,790 reverse strand.
GRCh37:CM000663.1
About this gene
This gene has 16 transcripts (splice variants), 3 paralogues and is associated with 5 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000374695.3 | HSPG2-001 | 14327 | 4391aa | ENSP00000363827.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS30625 | B6EU51 P98160 | NM_005529.5 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000430507.1 | HSPG2-201 | 2433 | 163aa | ENSP00000416385.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H7C4A6 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000426143.1 | HSPG2-013 | 856 | 187aa | ENSP00000392022.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q5SZJ1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000412328.1 | HSPG2-003 | 828 | 239aa | ENSP00000405412.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q5SZI5 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000439717.2 | HSPG2-005 | 637 | 190aa | ENSP00000395884.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q5SZJ2 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000453796.1 | HSPG2-015 | 621 | 207aa | ENSP00000396310.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q5SZI9 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000427897.1 | HSPG2-008 | 589 | 197aa | ENSP00000397573.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000374673.3 | HSPG2-004 | 538 | 179aa | ENSP00000363805.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000374676.4 | HSPG2-010 | 411 | 94aa | ENSP00000363808.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000486901.1 | HSPG2-002 | 3586 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000481644.1 | HSPG2-012 | 839 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000471322.1 | HSPG2-014 | 601 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000493940.2 | HSPG2-009 | 584 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000498495.1 | HSPG2-007 | 488 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000469378.1 | HSPG2-011 | 417 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000480900.1 | HSPG2-006 | 500 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
