Gene: CCDC40 ENSG00000141519

Description

coiled-coil domain containing 40 [Source:HGNC Symbol;Acc:26090]

Gene Synonyms

CILD15, FAP172, FLJ20753, FLJ32021, KIAA1640

Location

Chromosome 17: 78,010,435-78,074,412 forward strand.

GRCh37:CM000679.1

About this gene

This gene has 16 transcripts (splice variants) and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000397545.4	CCDC40-001	4294	1142aa	ENSP00000380679.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42395	I3L292 I3L2X6 Q4G0X9	NM_017950.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374877.3	CCDC40-201	3120	1030aa	ENSP00000364011.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58604	I3L292 I3L2X6 J3QSY2	NM_001243342.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374876.4	CCDC40-003	2010	478aa	ENSP00000364010.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L292 I3L2X6 Q4G0X9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000269318.5	CCDC40-002	1970	579aa	ENSP00000269318.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L292 I3L2X6 Q4G0X9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000571028.1	CCDC40-012	593	83aa	ENSP00000461034.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000574099.1	CCDC40-007	537	126aa	ENSP00000460002.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L292 I3L2X6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000576033.1	CCDC40-009	466	99aa	ENSP00000459489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L292	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000573474.1	CCDC40-011	554	85aa	ENSP00000460432.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000573903.1	CCDC40-014	561	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000572270.1	CCDC40-008	460	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000572253.1	CCDC40-005	3962	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000574799.1	CCDC40-004	3795	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000572083.1	CCDC40-010	816	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000576241.1	CCDC40-015	714	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000575431.1	CCDC40-013	551	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000574933.1	CCDC40-016	326	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Gene: CCDC40 ENSG00000141519

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Gene: CCDC40 ENSG00000141519

Summary