Description
vacuolar protein sorting 53 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25608]
Gene Synonyms
FLJ10979, HCCS1, hVps53L, pp13624
Location
Chromosome 17: 411,908-624,957 reverse strand.
GRCh37:CM000679.1
About this gene
This gene has 21 transcripts (splice variants) and is associated with 3 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000437048.2 | VPS53-001 | 13106 | 832aa | ENSP00000401435.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS45558 | I3L4P9 Q5VIR6 Q8NCR1 | NM_001128159.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000446250.2 | VPS53-201 | 3204 | 501aa | ENSP00000394386.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V0H8 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000291074.5 | VPS53-002 | 2656 | 670aa | ENSP00000291074.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS10995 | Q5VIR6 | NM_018289.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000571805.1 | VPS53-006 | 2356 | 699aa | ENSP00000459312.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L4P9 Q5VIR6 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000401468.3 | VPS53-003 | 1269 | 422aa | ENSP00000384294.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7EVT8 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000570650.1 | VPS53-019 | 729 | 237aa | ENSP00000458651.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L184 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000576019.1 | VPS53-011 | 613 | 68aa | ENSP00000461429.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L4P9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000574029.1 | VPS53-020 | 585 | 145aa | ENSP00000459159.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L1W6 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000573028.1 | VPS53-005 | 3204 | 216aa | ENSP00000458311.1 | Nonsense mediated decay | I3L0S6 I3L4P9 | - | - | |
| ENST00000389040.5 | VPS53-004 | 1903 | 547aa | ENSP00000373692.5 | Nonsense mediated decay | F6VX93 I3L4P9 | - | - | |
| ENST00000576149.1 | VPS53-009 | 2444 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000571456.1 | VPS53-021 | 744 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000575207.1 | VPS53-015 | 575 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000570510.2 | VPS53-012 | 570 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000572334.2 | VPS53-013 | 561 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000541903.2 | VPS53-017 | 494 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000570359.1 | VPS53-010 | 2781 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000575100.1 | VPS53-022 | 1972 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000572607.1 | VPS53-016 | 732 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000572259.1 | VPS53-014 | 683 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000570771.1 | VPS53-018 | 366 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
