Description
integrin, alpha 7 [Source:HGNC Symbol;Acc:6143]
Location
Chromosome 12: 56,078,352-56,109,827 reverse strand.
GRCh37:CM000674.1
About this gene
This gene has 23 transcripts (splice variants), 17 paralogues and is associated with 5 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000553804.1 | ITGA7-002 | 3935 | 1141aa | ENSP00000452120.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS55832 | Q13683 | NM_001144996.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000257880.7 | ITGA7-201 | 4348 | 1162aa | ENSP00000257880.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q13683 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000394230.2 | ITGA7-203 | 4228 | 1122aa | ENSP00000377777.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H7BYL2 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000394229.2 | ITGA7-202 | 4216 | 1118aa | ENSP00000377776.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V2C6 H2N331 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000257879.6 | ITGA7-001 | 4120 | 1137aa | ENSP00000257879.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8888 | G3V2C6 Q13683 Q4LE35 | NM_002206.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000347027.6 | ITGA7-004 | 4084 | 1131aa | ENSP00000343009.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V2C6 J3KNV4 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000555728.1 | ITGA7-014 | 3930 | 1181aa | ENSP00000452387.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q13683 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000452168.2 | ITGA7-003 | 3763 | 1044aa | ENSP00000393844.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44914 | Q13683 | NM_001144997.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000557555.1 | ITGA7-005 | 817 | 205aa | ENSP00000451039.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000557257.1 | ITGA7-011 | 576 | 153aa | ENSP00000450578.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V2C6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000554327.1 | ITGA7-018 | 1965 | 109aa | ENSP00000450693.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000555687.1 | ITGA7-019 | 573 | 55aa | ENSP00000451311.1 | Nonsense mediated decay | G3V2Q6 G3V3L8 | - | - | |
| ENST00000555809.1 | ITGA7-020 | 561 | 48aa | ENSP00000450798.1 | Nonsense mediated decay | G3V2Q6 | - | - | |
| ENST00000556273.1 | ITGA7-006 | 558 | 98aa | ENSP00000450679.1 | Nonsense mediated decay | G3V2I4 | - | - | |
| ENST00000553893.1 | ITGA7-010 | 558 | 48aa | ENSP00000452467.1 | Nonsense mediated decay | G3V2Q6 | - | - | |
| ENST00000554724.1 | ITGA7-012 | 552 | 35aa | ENSP00000452043.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000557058.1 | ITGA7-017 | 1040 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000553276.1 | ITGA7-009 | 972 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000554543.1 | ITGA7-013 | 707 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000554359.1 | ITGA7-015 | 588 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000553737.1 | ITGA7-007 | 570 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000556371.1 | ITGA7-008 | 493 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000557488.1 | ITGA7-016 | 296 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
