Description
PDZ domain containing ring finger 3 [Source:HGNC Symbol;Acc:17704]
Gene Synonyms
KIAA1095, LNX3, SEMACAP3, SEMCAP3
Location
Chromosome 3: 73,431,584-73,674,091 reverse strand.
GRCh37:CM000665.1
About this gene
This gene has 13 transcripts (splice variants) and 2 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000263666.4 | PDZRN3-001 | 4248 | 1066aa | ENSP00000263666.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS33789 | E7ENB6 Q9UPQ7 | NM_015009.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000462146.2 | PDZRN3-005 | 2927 | 723aa | ENSP00000418168.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7ENB6 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000535920.1 | PDZRN3-201 | 2927 | 788aa | ENSP00000442026.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7ENB6 F5H8I9 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000479530.1 | PDZRN3-006 | 2778 | 783aa | ENSP00000418624.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7ZAG0 E7ENB6 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000466780.1 | PDZRN3-004 | 2737 | 723aa | ENSP00000418484.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7ENB6 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000494559.1 | PDZRN3-007 | 2080 | 382aa | ENSP00000419095.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000492909.1 | PDZRN3-003 | 1776 | 492aa | ENSP00000419250.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JWE6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000308537.4 | PDZRN3-002 | 1136 | 360aa | ENSP00000308831.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9UPQ7 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000466348.1 | PDZRN3-010 | 645 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000498048.1 | PDZRN3-008 | 590 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000478209.1 | PDZRN3-012 | 757 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000477434.1 | PDZRN3-009 | 537 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000484487.1 | PDZRN3-011 | 406 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
