Description
LIM domain only 3 (rhombotin-like 2) [Source:HGNC Symbol;Acc:6643]
Gene Synonyms
DAT1, RBTN3, RBTNL2, RHOM3, Rhom-3
Location
Chromosome 12: 16,701,307-16,763,528 reverse strand.
GRCh37:CM000674.1
About this gene
This gene has 34 transcripts (splice variants) and 3 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000540445.1 | LMO3-007 | 906 | 167aa | ENSP00000442786.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58210 | Q8TAP4 | NM_001243613.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000320122.6 | LMO3-014 | 3759 | 145aa | ENSP00000312856.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8678 | F5GYZ6 F5GZR3 F5H2N9 F5H3S4 F5H4K9 F5H4T0 F6TDU8 Q8TAP4 | NM_001243611.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000261169.6 | LMO3-201 | 3526 | 156aa | ENSP00000261169.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58211 | B4DGL5 F5GYZ6 F5GZR3 F5H2N9 F5H3S4 F5H4K9 F5H4T0 F6TDU8 Q8TAP4 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000441439.2 | LMO3-003 | 3515 | 145aa | ENSP00000412479.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8678 | F5GYZ6 F5GZR3 F5H2N9 F5H3S4 F5H4K9 F5H4T0 F6TDU8 Q8TAP4 | NM_018640.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000354662.1 | LMO3-202 | 3450 | 145aa | ENSP00000346689.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8678 | F5GYZ6 F5GZR3 F5H2N9 F5H3S4 F5H4K9 F5H4T0 F6TDU8 Q8TAP4 | NM_001001395.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000447609.1 | LMO3-010 | 3365 | 145aa | ENSP00000413703.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8678 | F5GYZ6 F5GZR3 F5H2N9 F5H3S4 F5H4K9 F5H4T0 F6TDU8 Q8TAP4 | NM_001243610.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000537304.1 | LMO3-011 | 1685 | 145aa | ENSP00000440099.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8678 | F5GYZ6 F5GZR3 F5H2N9 F5H3S4 F5H4K9 F5H4T0 F6TDU8 Q8TAP4 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000540848.1 | LMO3-001 | 1574 | 145aa | ENSP00000445751.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8678 | F5GYZ6 F5GZR3 F5H2N9 F5H3S4 F5H4K9 F5H4T0 F6TDU8 Q8TAP4 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000535535.1 | LMO3-013 | 1488 | 145aa | ENSP00000446115.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8678 | F5GYZ6 F5GZR3 F5H2N9 F5H3S4 F5H4K9 F5H4T0 F6TDU8 Q8TAP4 | NM_001243612.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000534946.1 | LMO3-020 | 1016 | 145aa | ENSP00000439275.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8678 | F5GYZ6 F5GZR3 F5H2N9 F5H3S4 F5H4K9 F5H4T0 F6TDU8 Q8TAP4 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000541295.1 | LMO3-203 | 983 | 163aa | ENSP00000446463.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58212 | F5GYZ6 F5GZR3 F5H2N9 F5H3S4 F5H4K9 F5H4T0 F6TDU8 Q8TAP4 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000538020.1 | LMO3-030 | 622 | 58aa | ENSP00000446095.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H4K9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000546279.1 | LMO3-021 | 590 | 110aa | ENSP00000441360.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5GYZ6 F5GZR3 F5H2N9 F5H4K9 F5H4T0 F6TDU8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000538051.1 | LMO3-022 | 579 | 97aa | ENSP00000445504.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5GZR3 F5H2N9 F5H4K9 F5H4T0 F6TDU8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000541846.1 | LMO3-016 | 573 | 145aa | ENSP00000444393.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8678 | F5GYZ6 F5GZR3 F5H2N9 F5H3S4 F5H4K9 F5H4T0 F6TDU8 Q8TAP4 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000540590.1 | LMO3-019 | 565 | 84aa | ENSP00000439989.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H4K9 F5H4T0 F6TDU8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000539534.1 | LMO3-031 | 543 | 118aa | ENSP00000443807.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5GYZ6 F5GZR3 F5H2N9 F5H3S4 F5H4K9 F5H4T0 F6TDU8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000545436.1 | LMO3-029 | 530 | 88aa | ENSP00000444269.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5GZR3 F5H4K9 F5H4T0 F6TDU8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000537757.1 | LMO3-024 | 516 | 118aa | ENSP00000445193.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5GYZ6 F5GZR3 F5H2N9 F5H3S4 F5H4K9 F5H4T0 F6TDU8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000546281.1 | LMO3-025 | 496 | 118aa | ENSP00000442713.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5GYZ6 F5GZR3 F5H2N9 F5H3S4 F5H4K9 F5H4T0 F6TDU8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000396205.2 | LMO3-004 | 3534 | 69aa | ENSP00000379508.2 | Nonsense mediated decay | F5H4K9 F6TDU8 | - | - | |
| ENST00000453727.2 | LMO3-012 | 2403 | 60aa | ENSP00000404386.2 | Nonsense mediated decay | Q05D86 | - | - | |
| ENST00000541589.1 | LMO3-006 | 1499 | 60aa | ENSP00000440948.1 | Nonsense mediated decay | Q05D86 | - | - | |
| ENST00000541764.1 | LMO3-009 | 1489 | 92aa | ENSP00000437890.1 | Nonsense mediated decay | C9JE61 F5H4K9 F5H655 | - | - | |
| ENST00000424192.2 | LMO3-002 | 983 | 70aa | ENSP00000404656.2 | Nonsense mediated decay | C9JE61 F5H4K9 | - | - | |
| ENST00000536172.1 | LMO3-027 | 587 | 60aa | ENSP00000440885.1 | Nonsense mediated decay | Q05D86 | - | - | |
| ENST00000539232.1 | LMO3-028 | 580 | 60aa | ENSP00000438187.1 | Nonsense mediated decay | Q05D86 | - | - | |
| ENST00000544754.1 | LMO3-005 | 555 | 69aa | ENSP00000439900.1 | Nonsense mediated decay | F5H4K9 F6TDU8 | - | - | |
| ENST00000537568.1 | LMO3-018 | 594 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000536509.1 | LMO3-023 | 550 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000332914.6 | LMO3-017 | 549 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000544276.1 | LMO3-026 | 460 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000543721.1 | LMO3-008 | 3626 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000439600.2 | LMO3-015 | 1044 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
