Gene: SCN9A ENSG00000169432

Description

sodium channel, voltage-gated, type IX, alpha subunit [Source:HGNC Symbol;Acc:10597]

Gene Synonyms

ETHA, FEB3B, GEFSP7, NE-NA, NENA, Nav1.7, PN1, SFNP

Location

Chromosome 2: 167,051,695-167,232,503 reverse strand.

GRCh37:CM000664.1

About this gene

This gene has 7 transcripts (splice variants), 16 paralogues and is associated with 12 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000409672.1	SCN9A-001	9768	1977aa	ENSP00000386306.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46441	Q15858 Q53QP0	NM_002977.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375387.4	SCN9A-202	9787	1989aa	ENSP00000364536.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PF08 H7C064	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000303354.6	SCN9A-201	9787	1989aa	ENSP00000304748.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PBA5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409435.1	SCN9A-004	5967	1988aa	ENSP00000386330.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q15858	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452182.1	SCN9A-003	1618	539aa	ENSP00000393141.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C064	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000454569.1	SCN9A-002	1585	528aa	ENSP00000413212.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q15858	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000472119.1	SCN9A-006	905	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Gene: SCN9A ENSG00000169432

Summary

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Gene: SCN9A ENSG00000169432

Summary