Description
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 [Source:HGNC Symbol;Acc:11102]
Gene Synonyms
HARP, HHARP
Location
Chromosome 2: 217,277,137-217,347,776 forward strand.
GRCh37:CM000664.1
About this gene
This gene has 13 transcripts (splice variants), 2 paralogues and is associated with 4 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000357276.4 | SMARCAL1-001 | 3271 | 954aa | ENSP00000349823.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2403 | C9J6I8 C9J8F8 C9JHQ1 C9JP32 Q9NZC9 | NM_014140.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000358207.5 | SMARCAL1-003 | 3056 | 954aa | ENSP00000350940.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2403 | C9J6I8 C9J8F8 C9JHQ1 C9JP32 Q9NZC9 | NM_001127207.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000392128.2 | SMARCAL1-002 | 2431 | 796aa | ENSP00000375974.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JHQ1 H7BYI2 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000427645.1 | SMARCAL1-010 | 977 | 325aa | ENSP00000392997.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H7C051 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000430374.1 | SMARCAL1-004 | 722 | 145aa | ENSP00000405077.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J6I8 C9J8F8 C9JP32 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000444508.1 | SMARCAL1-006 | 711 | 130aa | ENSP00000398969.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J8F8 C9JP32 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000434435.1 | SMARCAL1-007 | 544 | 92aa | ENSP00000402967.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JP32 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000412913.1 | SMARCAL1-009 | 538 | 141aa | ENSP00000390248.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JHQ1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000445153.1 | SMARCAL1-012 | 484 | 161aa | ENSP00000400473.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000425815.1 | SMARCAL1-005 | 310 | 19aa | ENSP00000394410.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000479008.1 | SMARCAL1-011 | 633 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000486983.1 | SMARCAL1-013 | 793 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000496037.1 | SMARCAL1-008 | 542 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
