Description
SRY (sex determining region Y)-box 5 [Source:HGNC Symbol;Acc:11201]
Gene Synonyms
L-SOX5, L-SOX5B, L-SOX5F, MGC35153, RP11-444D3.1
Location
Chromosome 12: 23,682,440-24,103,966 reverse strand.
GRCh37:CM000674.1
About this gene
This gene has 17 transcripts (splice variants), 19 paralogues and is associated with 4 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000451604.2 | SOX5-002 | 4261 | 763aa | ENSP00000398273.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8699 | F5GWL1 P35711 T2CYZ2 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000546136.1 | SOX5-003 | 6969 | 750aa | ENSP00000437487.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44844 | F5GWL1 P35711 T2CYZ2 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000309359.1 | SOX5-201 | 4315 | 750aa | ENSP00000308927.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44844 | F5GWL1 P35711 T2CYZ2 | NM_152989.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000381381.2 | SOX5-202 | 3991 | 642aa | ENSP00000370788.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58216 | F5GWL1 P35711 | NM_001261414.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000537393.1 | SOX5-008 | 2769 | 728aa | ENSP00000439832.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H0I3 T2CZM2 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000545921.1 | SOX5-007 | 2589 | 753aa | ENSP00000443520.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58217 | F5GWL1 P35711 T2CYZ2 | NM_001261415.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000541536.1 | SOX5-009 | 2365 | 642aa | ENSP00000441973.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58216 | F5GWL1 P35711 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000396007.2 | SOX5-001 | 1379 | 377aa | ENSP00000379328.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS41761 | P35711 | NM_178010.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000541847.1 | SOX5-016 | 758 | 241aa | ENSP00000442119.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5GWL1 F5H876 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000441133.2 | SOX5-004 | 638 | 128aa | ENSP00000393240.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V0H1 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000538083.1 | SOX5-010 | 617 | 144aa | ENSP00000441579.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5GWL1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000367206.3 | SOX5-006 | 1816 | 509aa | ENSP00000356174.3 | Nonsense mediated decay | F5GWL1 I3L0A5 | - | - | |
| ENST00000536850.1 | SOX5-011 | 606 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000535530.1 | SOX5-014 | 576 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000536629.1 | SOX5-015 | 570 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000542241.1 | SOX5-012 | 376 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000536911.1 | SOX5-013 | 855 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
