Description
SMG7 nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:16792]
Gene Synonyms
C1orf16, EST1C, KIAA0250, SGA56M, SMG-7
Location
Chromosome 1: 183,441,351-183,567,381 forward strand.
GRCh37:CM000663.1
About this gene
This gene has 16 transcripts (splice variants) and 2 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000507469.1 | SMG7-010 | 4642 | 1178aa | ENSP00000425133.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS41445 | B1ALB4 Q92540 Q96N31 | NM_201569.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000367537.3 | SMG7-001 | 5970 | 1170aa | ENSP00000356507.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B1ALB4 B4DLY0 D6R9J3 D6RAD0 E9PD50 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000347615.2 | SMG7-002 | 5788 | 1137aa | ENSP00000340766.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS1355 | Q6TV06 Q92540 | NM_173156.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000515829.2 | SMG7-017 | 5629 | 1091aa | ENSP00000421358.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS53444 | B1ALB4 E9PCE5 Q92540 Q96N31 | NM_201568.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000508461.1 | SMG7-011 | 3985 | 1145aa | ENSP00000426915.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS53445 | Q92540 | NM_001174061.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000456731.2 | SMG7-201 | 3526 | 1049aa | ENSP00000407629.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B1ALB4 E9PCE5 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000419169.1 | SMG7-003 | 2483 | 756aa | ENSP00000388390.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B1ALB4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000507691.2 | SMG7-014 | 760 | 79aa | ENSP00000422742.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6R9J3 D6RAD0 | - | - | |
| ENST00000502375.1 | SMG7-013 | 566 | 56aa | ENSP00000422056.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6R9J3 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000440812.3 | SMG7-005 | 1190 | 184aa | ENSP00000410254.3 | Nonsense mediated decay | E9PEK3 | - | - | |
| ENST00000444547.2 | SMG7-015 | 580 | 73aa | ENSP00000400220.2 | Nonsense mediated decay | E9PBK2 | - | - | |
| ENST00000507406.1 | SMG7-016 | 582 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000495321.1 | SMG7-009 | 556 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000493045.1 | SMG7-006 | 673 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000493609.1 | SMG7-004 | 624 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000367538.1 | SMG7-008 | 328 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
