Transcript: ENST00000508461.1 SMG7-011

Description

SMG7 nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:16792]

Gene Synonyms

C1orf16, EST1C, KIAA0250, SGA56M, SMG-7

Location

Chromosome 1: 183,441,635-183,521,398 forward strand.

About this transcript

This transcript has 22 exons, is annotated with 16 domains and features, is associated with 32676 variant alleles and maps to 641 oligo probes.

Gene

This transcript is a product of gene ENSG00000116698.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000367537.3	SMG7-001	5970	1170aa	ENSP00000356507.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1ALB4 B4DLY0 D6R9J3 D6RAD0 E9PD50	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000347615.2	SMG7-002	5788	1137aa	ENSP00000340766.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1355	Q6TV06 Q92540	NM_173156.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000515829.2	SMG7-017	5629	1091aa	ENSP00000421358.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53444	B1ALB4 E9PCE5 Q92540 Q96N31	NM_201568.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507469.1	SMG7-010	4642	1178aa	ENSP00000425133.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41445	B1ALB4 Q92540 Q96N31	NM_201569.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508461.1	SMG7-011	3985	1145aa	ENSP00000426915.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53445	Q92540	NM_001174061.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456731.2	SMG7-201	3526	1049aa	ENSP00000407629.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1ALB4 E9PCE5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000419169.1	SMG7-003	2483	756aa	ENSP00000388390.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1ALB4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000507691.2	SMG7-014	760	79aa	ENSP00000422742.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R9J3 D6RAD0	-	-
ENST00000502375.1	SMG7-013	566	56aa	ENSP00000422056.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R9J3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000440812.3	SMG7-005	1190	184aa	ENSP00000410254.3	Nonsense mediated decay		E9PEK3	-	-
ENST00000444547.2	SMG7-015	580	73aa	ENSP00000400220.2	Nonsense mediated decay		E9PBK2	-	-
ENST00000507406.1	SMG7-016	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495321.1	SMG7-009	556	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493045.1	SMG7-006	673	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493609.1	SMG7-004	624	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000367538.1	SMG7-008	328	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 22, Coding exons: 21, Transcript length: 3,985 bps, Translation length: 1,145 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q92540

CCDS

This transcript is a member of the Human CCDS set: CCDS53445

Version

ENST00000508461.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000358510 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000508461.1 SMG7-011

Summary