Description
nucleotide-binding oligomerization domain containing 1 [Source:HGNC Symbol;Acc:16390]
Gene Synonyms
CARD4, CLR7.1, NLRC1
Location
Chromosome 7: 30,464,143-30,518,400 reverse strand.
GRCh37:CM000669.1
About this gene
This gene has 9 transcripts (splice variants) and 6 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000222823.4 | NOD1-001 | 4499 | 953aa | ENSP00000222823.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS5427 | C9J8X8 Q7Z2K1 Q9Y239 | NM_006092.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000423334.2 | NOD1-201 | 1587 | 249aa | ENSP00000409416.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DTU3 C9J8X8 Q7Z2K1 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000411552.1 | NOD1-004 | 794 | 59aa | ENSP00000396046.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J8X8 Q7Z2K1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000419799.1 | NOD1-005 | 757 | 59aa | ENSP00000395551.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J8X8 Q7Z2K1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000413433.1 | NOD1-006 | 637 | 59aa | ENSP00000399505.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J8X8 Q7Z2K1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000419601.1 | NOD1-007 | 578 | 45aa | ENSP00000410917.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J8X8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000434755.1 | NOD1-002 | 4610 | 779aa | ENSP00000416946.1 | Nonsense mediated decay | C9J8X8 G3XAL1 Q7Z2K1 | - | - | |
| ENST00000489614.1 | NOD1-003 | 3098 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000467706.1 | NOD1-008 | 905 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
