Description
TRIO and F-actin binding protein [Source:HGNC Symbol;Acc:17009]
Gene Synonyms
DFNB28, HRIHFB2122, KIAA1662, TARA, Tara, dJ37E16.4
Location
Chromosome 22: 38,093,011-38,172,563 forward strand.
GRCh37:CM000684.1
About this gene
This gene has 11 transcripts (splice variants), 1 paralogue and is associated with 2 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000406386.3 | TRIOBP-001 | 10129 | 2365aa | ENSP00000384312.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS43015 | F6WMF4 F6WYE2 Q9H2D6 | NM_001039141.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000403663.2 | TRIOBP-006 | 2324 | 652aa | ENSP00000386026.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS43016 | F6WMF4 F6WYE2 F8W6V6 | NM_007032.5 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000407319.2 | TRIOBP-005 | 2125 | 431aa | ENSP00000383913.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS33644 | F6WMF4 F6WYE2 Q9H2D6 | NM_138632.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000418339.1 | TRIOBP-008 | 939 | 265aa | ENSP00000396946.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F6TR96 F6WMF4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000428075.1 | TRIOBP-012 | 931 | 311aa | ENSP00000399006.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000417857.1 | TRIOBP-010 | 919 | 256aa | ENSP00000387881.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F6WMF4 F6WYE2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000452519.1 | TRIOBP-011 | 586 | 83aa | ENSP00000407542.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F6WMF4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000344404.6 | TRIOBP-002 | 7300 | 104aa | ENSP00000340312.6 | Nonsense mediated decay | H7BXW4 | - | - | |
| ENST00000413051.2 | TRIOBP-009 | 904 | 102aa | ENSP00000400680.2 | Nonsense mediated decay | H0Y5T8 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000492485.1 | TRIOBP-003 | 3948 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000331103.5 | TRIOBP-013 | 513 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
