Transcript: ENST00000406386.3 TRIOBP-001

Description

TRIO and F-actin binding protein [Source:HGNC Symbol;Acc:17009]

Gene Synonyms

DFNB28, HRIHFB2122, KIAA1662, TARA, Tara, dJ37E16.4

Location

Chromosome 22: 38,093,011-38,172,563 forward strand.

About this transcript

This transcript has 24 exons, is annotated with 23 domains and features, is associated with 40434 variant alleles and maps to 984 oligo probes.

Gene

This transcript is a product of gene ENSG00000100106.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000406386.3	TRIOBP-001	10129	2365aa	ENSP00000384312.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43015	F6WMF4 F6WYE2 Q9H2D6	NM_001039141.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000403663.2	TRIOBP-006	2324	652aa	ENSP00000386026.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43016	F6WMF4 F6WYE2 F8W6V6	NM_007032.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000407319.2	TRIOBP-005	2125	431aa	ENSP00000383913.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33644	F6WMF4 F6WYE2 Q9H2D6	NM_138632.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418339.1	TRIOBP-008	939	265aa	ENSP00000396946.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6TR96 F6WMF4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000428075.1	TRIOBP-012	931	311aa	ENSP00000399006.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000417857.1	TRIOBP-010	919	256aa	ENSP00000387881.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6WMF4 F6WYE2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000452519.1	TRIOBP-011	586	83aa	ENSP00000407542.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6WMF4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000344404.6	TRIOBP-002	7300	104aa	ENSP00000340312.6	Nonsense mediated decay		H7BXW4	-	-
ENST00000413051.2	TRIOBP-009	904	102aa	ENSP00000400680.2	Nonsense mediated decay		H0Y5T8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000492485.1	TRIOBP-003	3948	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000331103.5	TRIOBP-013	513	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 24, Coding exons: 21, Transcript length: 10,129 bps, Translation length: 2,365 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H2D6

CCDS

This transcript is a member of the Human CCDS set: CCDS43015

Version

ENST00000406386.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000319439 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000406386.3 TRIOBP-001

Summary