Description
intraflagellar transport 80 homolog (Chlamydomonas) [Source:HGNC Symbol;Acc:29262]
Gene Synonyms
ATD2, KIAA1374, WDR56
Location
Chromosome 3: 159,974,774-160,117,668 reverse strand.
GRCh37:CM000665.1
About this gene
This gene has 27 transcripts (splice variants), 1 paralogue and is associated with 6 phenotypes.
Transcripts
Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
---|---|---|---|---|---|---|---|---|---|
ENST00000326448.7 | IFT80-001 | 4306 | 777aa | ENSP00000312778.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS3188 | C9IZR2 C9J627 C9J6G8 C9J6I5 C9JSB1 C9JUI1 C9JUJ1 Q9P2H3 | NM_020800.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000483465.1 | IFT80-004 | 4044 | 640aa | ENSP00000418196.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54668 | C9IZR2 C9J6G8 C9J6I5 C9JUJ1 Q9P2H3 | NM_001190242.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000496589.1 | IFT80-002 | 3073 | 640aa | ENSP00000420646.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54668 | C9IZR2 C9J6G8 C9J6I5 C9JUJ1 Q9P2H3 | NM_001190241.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000465537.1 | IFT80-022 | 860 | 122aa | ENSP00000418602.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9IZR2 C9J6G8 C9J6I5 C9JUJ1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000498409.1 | IFT80-009 | 719 | 179aa | ENSP00000420001.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J627 C9J6G8 C9J6I5 C9JSB1 C9JUI1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000489004.1 | IFT80-012 | 610 | 121aa | ENSP00000418455.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J627 C9JUI1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000478370.1 | IFT80-014 | 579 | 32aa | ENSP00000420758.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J6G8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000468218.1 | IFT80-015 | 567 | 42aa | ENSP00000417057.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J6G8 C9J6I5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000483325.1 | IFT80-026 | 554 | 122aa | ENSP00000417552.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H7C4K6 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
ENST00000478536.1 | IFT80-007 | 542 | 64aa | ENSP00000419468.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JUI1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000486856.1 | IFT80-020 | 539 | 32aa | ENSP00000417861.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J6G8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000475677.1 | IFT80-008 | 529 | 77aa | ENSP00000419458.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J6G8 C9J6I5 C9JUJ1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000472555.1 | IFT80-024 | 687 | 69aa | ENSP00000420401.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
ENST00000482317.1 | IFT80-019 | 574 | 95aa | ENSP00000418497.1 | Nonsense mediated decay | C9JUI1 F8WCB0 | - | - | |
ENST00000484963.1 | IFT80-023 | 382 | 55aa | ENSP00000420260.1 | Nonsense mediated decay | H7C5M3 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
ENST00000477495.1 | IFT80-013 | 766 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000472773.1 | IFT80-016 | 657 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000478460.1 | IFT80-017 | 591 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000463240.1 | IFT80-027 | 588 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000468327.1 | IFT80-021 | 574 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000465972.1 | IFT80-018 | 569 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000466326.1 | IFT80-006 | 558 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000498145.1 | IFT80-010 | 544 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000487943.1 | IFT80-003 | 3893 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000467254.1 | IFT80-011 | 764 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000478278.1 | IFT80-028 | 582 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000461213.1 | IFT80-025 | 553 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |