Transcript: ENST00000483465.1 IFT80-004

Description

intraflagellar transport 80 homolog (Chlamydomonas) [Source:HGNC Symbol;Acc:29262]

Gene Synonyms

ATD2, KIAA1374, WDR56

Location

Chromosome 3: 159,974,780-160,101,444 reverse strand.

About this transcript

This transcript has 19 exons, is annotated with 17 domains and features, is associated with 49863 variant alleles and maps to 627 oligo probes.

Gene

This transcript is a product of gene ENSG00000068885.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000326448.7	IFT80-001	4306	777aa	ENSP00000312778.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3188	C9IZR2 C9J627 C9J6G8 C9J6I5 C9JSB1 C9JUI1 C9JUJ1 Q9P2H3	NM_020800.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483465.1	IFT80-004	4044	640aa	ENSP00000418196.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54668	C9IZR2 C9J6G8 C9J6I5 C9JUJ1 Q9P2H3	NM_001190242.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000496589.1	IFT80-002	3073	640aa	ENSP00000420646.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54668	C9IZR2 C9J6G8 C9J6I5 C9JUJ1 Q9P2H3	NM_001190241.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000465537.1	IFT80-022	860	122aa	ENSP00000418602.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZR2 C9J6G8 C9J6I5 C9JUJ1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000498409.1	IFT80-009	719	179aa	ENSP00000420001.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J627 C9J6G8 C9J6I5 C9JSB1 C9JUI1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000489004.1	IFT80-012	610	121aa	ENSP00000418455.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J627 C9JUI1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000478370.1	IFT80-014	579	32aa	ENSP00000420758.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J6G8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000468218.1	IFT80-015	567	42aa	ENSP00000417057.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J6G8 C9J6I5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000483325.1	IFT80-026	554	122aa	ENSP00000417552.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C4K6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000478536.1	IFT80-007	542	64aa	ENSP00000419468.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JUI1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000486856.1	IFT80-020	539	32aa	ENSP00000417861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J6G8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000475677.1	IFT80-008	529	77aa	ENSP00000419458.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J6G8 C9J6I5 C9JUJ1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000472555.1	IFT80-024	687	69aa	ENSP00000420401.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000482317.1	IFT80-019	574	95aa	ENSP00000418497.1	Nonsense mediated decay		C9JUI1 F8WCB0	-	-
ENST00000484963.1	IFT80-023	382	55aa	ENSP00000420260.1	Nonsense mediated decay		H7C5M3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477495.1	IFT80-013	766	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472773.1	IFT80-016	657	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478460.1	IFT80-017	591	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463240.1	IFT80-027	588	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468327.1	IFT80-021	574	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465972.1	IFT80-018	569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466326.1	IFT80-006	558	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498145.1	IFT80-010	544	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487943.1	IFT80-003	3893	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467254.1	IFT80-011	764	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478278.1	IFT80-028	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461213.1	IFT80-025	553	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 16, Transcript length: 4,044 bps, Translation length: 640 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9P2H3

CCDS

This transcript is a member of the Human CCDS set: CCDS54668

Version

ENST00000483465.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000352654 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000483465.1 IFT80-004

Summary