Description
upstream transcription factor 1 [Source:HGNC Symbol;Acc:12593]
Gene Synonyms
BHLHB11, FCHL, FCHL1, HYPLIP1, MLTF, MLTFI, UEF, USF, bHLHb11
Location
Chromosome 1: 161,009,041-161,015,767 reverse strand.
GRCh37:CM000663.1
About this gene
This gene has 12 transcripts (splice variants), 1 paralogue and is associated with 2 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000368021.3 | USF1-001 | 1807 | 310aa | ENSP00000357000.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS1214 | E9PJ52 E9PQA2 P22415 | NM_007122.4 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000435396.1 | USF1-201 | 1765 | 251aa | ENSP00000390109.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PQA2 P22415 | NM_207005.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000368020.1 | USF1-002 | 1717 | 310aa | ENSP00000356999.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS1214 | E9PJ52 E9PQA2 P22415 | NM_001276373.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000368019.1 | USF1-003 | 998 | 282aa | ENSP00000356998.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B1AQP1 E9PJ52 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000531842.1 | USF1-011 | 720 | 217aa | ENSP00000435005.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PJ52 E9PME6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000534633.1 | USF1-008 | 610 | 105aa | ENSP00000432533.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PQA2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000528768.1 | USF1-009 | 505 | 165aa | ENSP00000433041.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000473969.2 | USF1-004 | 1092 | 48aa | ENSP00000435671.1 | Nonsense mediated decay | E9PJ52 | - | - | |
| ENST00000472217.1 | USF1-005 | 1097 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000496363.1 | USF1-006 | 990 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000491629.1 | USF1-007 | 933 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000529476.1 | USF1-010 | 581 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
