Gene: PAX2 ENSG00000075891

Description

paired box 2 [Source:HGNC Symbol;Acc:8616]

Gene Synonyms

PAPRS

Location

Chromosome 10: 102,495,360-102,589,698 forward strand.

GRCh37:CM000672.1

About this gene

This gene has 10 transcripts (splice variants), 8 paralogues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000428433.1	PAX2-202	4126	417aa	ENSP00000396259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53569	Q02962 Q5SZP1	NM_003990.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370296.2	PAX2-201	4209	419aa	ENSP00000359319.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q02962 Q5SZP1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355243.3	PAX2-001	4056	394aa	ENSP00000347385.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41561	Q02962	NM_003989.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361791.3	PAX2-002	3516	396aa	ENSP00000355069.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7499	Q02962	NM_003988.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554172.1	PAX2-005	1748	303aa	ENSP00000452489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V5S4 Q6YFJ8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000556085.1	PAX2-006	1253	393aa	ENSP00000452527.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V5U4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427256.1	PAX2-003	677	214aa	ENSP00000398652.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SZP1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554363.1	PAX2-007	582	35aa	ENSP00000452429.1	Nonsense mediated decay		G3V5M8	-	-
ENST00000553492.1	PAX2-008	507	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483202.2	PAX2-004	1216	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Genomic alignments

As of the latest update in March 2020 we are not supporting data for species other than human on this GRCh37 site and the view you wish to use is disabled.

You can read more about why we have done this on our blog.

You can still view this page on the following archive resources:

1. The Ensembl 75 archive represents a code and data freeze taken in February 2014.

2. The GRCh37 archive represents a code and data freeze taken in January 2019.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Gene: PAX2 ENSG00000075891

Genomic alignments