Transcript: ENST00000358511.6 COL6A6-001

Description

collagen, type VI, alpha 6 [Source:HGNC Symbol;Acc:27023]

Location

About this transcript

This transcript has 36 exons, is annotated with 57 domains and features, is associated with 49717 variant alleles and maps to 961 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358511.6	COL6A6-001	9581	2263aa	ENSP00000351310.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46911	A6NMZ7	NM_001102608.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453409.2	COL6A6-201	8458	2263aa	ENSP00000399236.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W6Y7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511332.1	COL6A6-003	778	259aa	ENSP00000422921.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000506143.1	COL6A6-002	4353	298aa	ENSP00000426006.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 36, Coding exons: 36, Transcript length: 9,581 bps, Translation length: 2,263 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A6NMZ7

CCDS

This transcript is a member of the Human CCDS set: CCDS46911

Version

ENST00000358511.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000356705 (version 5)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.