Transcript: ENST00000411789.2 PABPN1L-003

Description

poly(A) binding protein, nuclear 1-like (cytoplasmic) [Source:HGNC Symbol;Acc:37237]

Gene Synonyms

EPABP2, PABPNL1, ePABP2

Location

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 2432 variant alleles and maps to 174 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000419291.2	PABPN1L-001	1272	278aa	ENSP00000408598.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45547	A6NDY0	NM_001080487.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427766.1	PABPN1L-202	1162	297aa	ENSP00000390913.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JEK9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411789.2	PABPN1L-003	873	255aa	ENSP00000405259.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NDY0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378358.4	PABPN1L-201	870	289aa	ENSP00000367609.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NDY0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547152.1	PABPN1L-002	854	266aa	ENSP00000449247.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NDY0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 873 bps, Translation length: 255 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A6NDY0

Version

ENST00000411789.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000407503 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.