Transcript: ENST00000354534.6 SCN8A-001

Description

sodium channel, voltage gated, type VIII, alpha subunit [Source:HGNC Symbol;Acc:10596]

Gene Synonyms

CERIII, CIAT, CerIII, EIEE13, MED, NaCh6, Nav1.6, PN4

Location

About this transcript

This transcript has 27 exons, is annotated with 63 domains and features, is associated with 87602 variant alleles and maps to 1307 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000354534.6	SCN8A-001	11556	1980aa	ENSP00000346534.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44891	Q8WWN3 Q9P2Q6 Q9UQD0	NM_014191.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545061.1	SCN8A-201	6958	1939aa	ENSP00000440360.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53794	F8VWM7 Q8WWN3 Q9P2Q6 Q9UQD0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355133.3	SCN8A-005	5820	1557aa	ENSP00000347255.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VWM7 Q8WWN3	-	-
ENST00000550891.1	SCN8A-003	3253	972aa	ENSP00000448415.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRN5 Q6B4S4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000551216.1	SCN8A-004	1627	475aa	ENSP00000447567.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W0Q0	-	-
ENST00000546961.1	SCN8A-002	465	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548086.1	SCN8A-006	423	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 27, Coding exons: 26, Transcript length: 11,556 bps, Translation length: 1,980 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UQD0

CCDS

This transcript is a member of the Human CCDS set: CCDS44891

Version

ENST00000354534.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000404372 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.