Transcript: ENST00000538212.2 TPK1-014

Description

thiamin pyrophosphokinase 1 [Source:HGNC Symbol;Acc:17358]

Gene Synonyms

HTPK1, PP20, THMD5

Location

Chromosome 7: 144,149,036-144,421,252 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 8 domains and features, is associated with 113966 variant alleles and maps to 348 oligo probes.

Gene

This transcript is a product of gene ENSG00000196511.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000549981.1	TPK1-202	2806	124aa	ENSP00000448698.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I6L9B8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000360057.3	TPK1-001	2439	243aa	ENSP00000353165.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5888	F8VRJ6 Q75MX1 Q9H3S4	NM_022445.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378099.3	TPK1-201	2283	194aa	ENSP00000367339.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55178	F5GZG6	NM_001042482.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538212.2	TPK1-014	2243	189aa	ENSP00000438813.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6ZQX6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552881.1	TPK1-007	581	166aa	ENSP00000448655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRJ6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000482940.1	TPK1-004	2815	79aa	ENSP00000449909.1	Nonsense mediated decay		F8VVJ1	-	-
ENST00000378098.4	TPK1-002	1920	121aa	ENSP00000367338.4	Nonsense mediated decay		F8WCM7	-	-
ENST00000489798.1	TPK1-006	440	42aa	ENSP00000450028.1	Nonsense mediated decay		F8VPB3	-	-
ENST00000547966.1	TPK1-012	747	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548831.1	TPK1-011	558	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548460.1	TPK1-008	519	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000546806.1	TPK1-009	460	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000551062.1	TPK1-013	440	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481645.1	TPK1-003	4429	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 2,243 bps, Translation length: 189 residues

Version

ENST00000538212.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs67644764, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) ESP6500:African_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000404403 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000538212.2 TPK1-014

Summary