Transcript: ENST00000428343.1 RFX8-001

Description

RFX family member 8, lacking RFX DNA binding domain [Source:HGNC Symbol;Acc:37253]

Gene Synonyms

FLJ42986

Location

About this transcript

This transcript has 12 exons, is annotated with 3 domains and features, is associated with 33498 variant alleles and maps to 331 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000428343.1	RFX8-001	1686	473aa	ENSP00000401536.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46376	Q6ZV50	NM_001145664.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376826.2	RFX8-201	1948	586aa	ENSP00000366022.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6ZV50	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000481179.1	RFX8-003	1907	153aa	ENSP00000422968.1	Nonsense mediated decay		E9PDA6	-	-
ENST00000484091.1	RFX8-004	530	80aa	ENSP00000424661.1	Nonsense mediated decay		D6RAX4	-	-
ENST00000492238.1	RFX8-005	774	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 1,686 bps, Translation length: 473 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6ZV50

CCDS

This transcript is a member of the Human CCDS set: CCDS46376

Version

ENST00000428343.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000339800 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.