Transcript: ENST00000340434.4 PTAR1-002

Description

protein prenyltransferase alpha subunit repeat containing 1 [Source:HGNC Symbol;Acc:30449]

Location

Chromosome 9: 72,333,054-72,374,858 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 14 domains and features, is associated with 17519 variant alleles and maps to 220 oligo probes.

Gene

This transcript is a product of gene ENSG00000188647.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000377200.5	PTAR1-001	9876	350aa	ENSP00000366405.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXY1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000472967.2	PTAR1-004	1689	29aa	ENSP00000440164.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXY1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000340434.4	PTAR1-002	1417	402aa	ENSP00000344299.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47978	Q7Z6K3	NM_001099666.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415701.2	PTAR1-005	826	168aa	ENSP00000405943.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000474925.2	PTAR1-006	616	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467511.1	PTAR1-003	530	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,417 bps, Translation length: 402 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7Z6K3

CCDS

This transcript is a member of the Human CCDS set: CCDS47978

Version

ENST00000340434.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000052582 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000340434.4 PTAR1-002

Summary