Transcript: ENST00000379410.3 PLEKHN1-001

Description

pleckstrin homology domain containing, family N member 1 [Source:HGNC Symbol;Acc:25284]

Gene Synonyms

DKFZP434H2010, RP11-54O7.7

Location

About this transcript

This transcript has 16 exons, is annotated with 11 domains and features, is associated with 6088 variant alleles and maps to 539 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000379409.2	PLEKHN1-005	2455	663aa	ENSP00000368719.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSM5 Q494U1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379410.3	PLEKHN1-001	2404	611aa	ENSP00000368720.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4	J3KSM5 Q494U1	NM_032129.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379407.3	PLEKHN1-004	2194	576aa	ENSP00000368717.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53256	J3KSM5 Q494U1	NM_001160184.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000491024.1	PLEKHN1-003	698	176aa	ENSP00000462558.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSM5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000480267.1	PLEKHN1-002	464	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 2,404 bps, Translation length: 611 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q494U1

CCDS

This transcript is a member of the Human CCDS set: CCDS4

Version

ENST00000379410.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000097940 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.