Transcript: ENST00000225844.2 CCL13-001

Description

chemokine (C-C motif) ligand 13 [Source:HGNC Symbol;Acc:10611]

Gene Synonyms

CKb10, MCP-4, MCP4, MGC17134, NCC-1, NCC1, SCYA13, SCYL1

Location

About this transcript

This transcript has 3 exons, is annotated with 8 domains and features, is associated with 1130 variant alleles and maps to 273 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000225844.2	CCL13-001	851	98aa	ENSP00000225844.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11281	Q99616	NM_005408.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000577681.1	CCL13-002	669	63aa	ENSP00000463667.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O95690	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 851 bps, Translation length: 98 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99616

CCDS

This transcript is a member of the Human CCDS set: CCDS11281

Version

ENST00000225844.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256389 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.