Transcript: ENST00000319550.4 NT5DC1-002

Description

5'-nucleotidase domain containing 1 [Source:HGNC Symbol;Acc:21556]

Gene Synonyms

C6orf200, LP2642, MGC24302, NT5C2L1, dJ486I3.1

Location

About this transcript

This transcript has 12 exons, is annotated with 7 domains and features, is associated with 62369 variant alleles and maps to 791 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000319550.4	NT5DC1-002	6923	455aa	ENSP00000326858.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5104	Q5TFE4	NM_152729.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000419791.1	NT5DC1-003	667	195aa	ENSP00000393578.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5QPD0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000417846.1	NT5DC1-004	417	111aa	ENSP00000404419.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000460749.1	NT5DC1-001	907	141aa	ENSP00000433238.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 6,923 bps, Translation length: 455 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5TFE4

CCDS

This transcript is a member of the Human CCDS set: CCDS5104

Version

ENST00000319550.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000041931 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.