Transcript: ENST00000578776.1 AQP4-002

Description

aquaporin 4 [Source:HGNC Symbol;Acc:637]

Gene Synonyms

HMIWC2, MIWC

Location

Chromosome 18: 24,440,749-24,445,671 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 17 domains and features, is associated with 2458 variant alleles and maps to 146 oligo probes.

Gene

This transcript is a product of gene ENSG00000171885.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000383168.4	AQP4-001	5274	323aa	ENSP00000372654.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11889	B4DHF5 F1DSG4 P55087	NM_004028.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000581374.1	AQP4-003	1586	301aa	ENSP00000462597.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58617	P55087	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440832.3	AQP4-005	1169	301aa	ENSP00000393121.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58617	P55087	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000578776.1	AQP4-002	575	185aa	ENSP00000462075.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KRM4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000383170.3	AQP4-008	567	98aa	ENSP00000372656.3	Nonsense mediated decay		H0Y3H5	-	-
ENST00000583022.1	AQP4-006	606	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000584088.1	AQP4-004	552	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 575 bps, Translation length: 185 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000578776.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000446534 (version 1)

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Transcript: ENST00000578776.1 AQP4-002

Summary