Transcript: ENST00000493887.1 SLC38A11-005

Description

solute carrier family 38, member 11 [Source:HGNC Symbol;Acc:26836]

Gene Synonyms

AVT2, FLJ39822

Location

Chromosome 2: 165,768,168-165,794,207 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 10224 variant alleles and maps to 106 oligo probes.

Gene

This transcript is a product of gene ENSG00000169507.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000303735.4	SLC38A11-001	3737	384aa	ENSP00000306178.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2224	Q08AI6	NM_173512.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409058.1	SLC38A11-002	1647	437aa	ENSP00000387345.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZ86	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409149.3	SLC38A11-003	1621	406aa	ENSP00000386272.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56142	Q08AI6	NM_001199148.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409662.1	SLC38A11-009	1542	406aa	ENSP00000386774.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56142	Q08AI6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424914.1	SLC38A11-010	452	150aa	ENSP00000401448.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C1P1	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000493887.1	SLC38A11-005	577	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483641.1	SLC38A11-007	786	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492134.1	SLC38A11-004	785	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470576.1	SLC38A11-008	696	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465898.1	SLC38A11-006	683	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 577 bps,

Version

ENST00000493887.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000333392 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000493887.1 SLC38A11-005

Summary