Transcript: ENST00000496772.1 SLC33A1-006

Description

solute carrier family 33 (acetyl-CoA transporter), member 1 [Source:HGNC Symbol;Acc:95]

Gene Synonyms

ACATN, AT-1, AT1, CCHLND, SPG42

Location

Chromosome 3: 155,546,002-155,560,394 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 8 domains and features, is associated with 6581 variant alleles and maps to 281 oligo probes.

Gene

This transcript is a product of gene ENSG00000169359.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392845.3	SLC33A1-002	9217	549aa	ENSP00000376587.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3173	O00400	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359479.3	SLC33A1-001	2404	549aa	ENSP00000352456.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3173	O00400	NM_004733.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000475842.1	SLC33A1-003	1060	269aa	ENSP00000419066.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000496772.1	SLC33A1-006	555	185aa	ENSP00000419165.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C577	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000468581.1	SLC33A1-005	764	109aa	ENSP00000418847.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000460729.1	SLC33A1-004	499	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 555 bps, Translation length: 185 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000496772.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000351173 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000496772.1 SLC33A1-006

Summary