Transcript: ENST00000297792.5 KDM1B-002

Description

lysine (K)-specific demethylase 1B [Source:HGNC Symbol;Acc:21577]

Gene Synonyms

AOF1, C6orf193, FLJ33898, FLJ34109, FLJ43328, LSD2, bA204B7.3, dJ298J15.2

Location

About this transcript

This transcript has 18 exons, is annotated with 15 domains and features, is associated with 32710 variant alleles and maps to 685 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000388870.2	KDM1B-201	4574	823aa	ENSP00000373522.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KPL2 Q08EI0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397244.1	KDM1B-202	3878	591aa	ENSP00000380419.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F2Z2A7 Q08EI0	NM_153042.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000297792.5	KDM1B-002	3811	590aa	ENSP00000297792.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34343	Q08EI0 Q8NB78	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449850.1	KDM1B-004	2045	640aa	ENSP00000405669.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q08EI0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000546309.2	KDM1B-003	496	113aa	ENSP00000442670.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q08EI0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 18, Coding exons: 16, Transcript length: 3,811 bps, Translation length: 590 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NB78

CCDS

This transcript is a member of the Human CCDS set: CCDS34343

Version

ENST00000297792.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000277080 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.