Transcript: ENST00000293441.1 SHANK1-001

Description

SH3 and multiple ankyrin repeat domains 1 [Source:HGNC Symbol;Acc:15474]

Gene Synonyms

SPANK-1, SSTRIP, synamon

Location

Chromosome 19: 51,165,084-51,220,195 reverse strand.

About this transcript

This transcript has 23 exons, is annotated with 63 domains and features, is associated with 28189 variant alleles and maps to 685 oligo probes.

Gene

This transcript is a product of gene ENSG00000161681.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000293441.1	SHANK1-001	6643	2161aa	ENSP00000293441.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12799	Q9Y566	NM_016148.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000391814.1	SHANK1-002	6622	2169aa	ENSP00000375690.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H9KV90	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359082.3	SHANK1-008	6459	2152aa	ENSP00000351984.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9Y566	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000391813.1	SHANK1-003	4785	1548aa	ENSP00000375689.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9Y566	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000468654.1	SHANK1-006	668	183aa	ENSP00000469719.1	Nonsense mediated decay		M0QYB5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000483981.2	SHANK1-007	422	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483128.1	SHANK1-004	780	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461154.1	SHANK1-005	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 23, Coding exons: 23, Transcript length: 6,643 bps, Translation length: 2,161 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y566

CCDS

This transcript is a member of the Human CCDS set: CCDS12799

Version

ENST00000293441.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000268071 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000293441.1 SHANK1-001

Summary