Transcript: ENST00000497069.2 PMF1-004

Description

polyamine-modulated factor 1 [Source:HGNC Symbol;Acc:9112]

Gene Synonyms

PMF1

Location

Chromosome 1: 156,182,817-156,209,509 forward strand.

About this transcript

This transcript has 6 exons, is associated with 12101 variant alleles and maps to 312 oligo probes.

Gene

This transcript is a product of gene ENSG00000160783.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368277.3	PMF1-001	1068	205aa	ENSP00000357260.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30886	D3DVB3 Q6P1K2	NM_007221.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368279.3	PMF1-002	1019	180aa	ENSP00000357262.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55649	Q6P1K2	NM_001199653.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368273.4	PMF1-005	884	207aa	ENSP00000357256.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55648	Q6P1K2	NM_001199654.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000567140.1	PMF1-202	672	220aa	ENSP00000458021.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55650	Q6P1K2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000565805.1	PMF1-201	537	175aa	ENSP00000455571.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55651	Q6P1K2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000466489.1	PMF1-008	933	87aa	ENSP00000476770.1	Nonsense mediated decay		-	-	-
ENST00000497069.2	PMF1-004	837	93aa	ENSP00000476760.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000606952.1	PMF1-010	1275	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 837 bps, Translation length: 93 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000497069.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000040863 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000497069.2 PMF1-004

Summary