Transcript: ENST00000487649.1 FAM189B-007

Description

family with sequence similarity 189, member B [Source:HGNC Symbol;Acc:1233]

Gene Synonyms

C1orf2, COTE1, cote1

Location

Chromosome 1: 155,217,218-155,224,982 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 4361 variant alleles and maps to 404 oligo probes.

Gene

This transcript is a product of gene ENSG00000160767.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000361361.2	FAM189B-001	3082	668aa	ENSP00000354958.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1103	P81408	NM_006589.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368368.3	FAM189B-004	2609	650aa	ENSP00000357352.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58035	P81408	NM_001267608.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000350210.2	FAM189B-002	2379	572aa	ENSP00000307128.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1104	P81408	NM_198264.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000491082.1	FAM189B-008	1006	325aa	ENSP00000427011.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RD59	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000487649.1	FAM189B-007	1499	144aa	ENSP00000427520.1	Nonsense mediated decay		Q96AD8	-	-
ENST00000472550.1	FAM189B-010	948	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481822.1	FAM189B-006	2103	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000368366.1	FAM189B-003	1962	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000497941.1	FAM189B-009	871	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,499 bps, Translation length: 144 residues

Version

ENST00000487649.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000087230 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000487649.1 FAM189B-007

Summary