Transcript: ENST00000529838.2 VPS11-004

Description

vacuolar protein sorting 11 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:14583]

Gene Synonyms

END1, PEP5, RNF108, hVPS11

Location

Chromosome 11: 118,938,534-118,952,674 forward strand.

About this transcript

This transcript has 13 exons, is associated with 6950 variant alleles and maps to 556 oligo probes.

Gene

This transcript is a product of gene ENSG00000160695.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000300793.6	VPS11-201	3218	940aa	ENSP00000475301.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3KPW6	NM_021729.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527798.1	VPS11-002	3387	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000531528.2	VPS11-001	3312	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000524454.1	VPS11-009	626	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000534551.1	VPS11-008	585	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000530809.1	VPS11-005	542	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000529838.2	VPS11-004	3351	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000526829.1	VPS11-007	1952	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000529545.1	VPS11-006	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 13, Coding exons: 0, Transcript length: 3,351 bps,

Version

ENST00000529838.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000389677 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

Favourite species

All species

Recent locations

Transcript: ENST00000529838.2 VPS11-004

Summary