Transcript: ENST00000353487.2 SPPL3-001

Description

signal peptide peptidase like 3 [Source:HGNC Symbol;Acc:30424]

Gene Synonyms

DKFZP586C1324, IMP2, MDHV1887, MGC126674, MGC126676, MGC90402, PRO4332, PSH1, PSL4

Location

Chromosome 12: 121,200,313-121,342,174 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 17 domains and features, is associated with 66441 variant alleles and maps to 680 oligo probes.

Gene

This transcript is a product of gene ENSG00000157837.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000353487.2	SPPL3-001	4148	384aa	ENSP00000288680.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9208	F5H2A2 F5H4L1 F5H4Y6 F5H6I1 F5H7J2 Q8TCT6	NM_139015.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536996.1	SPPL3-003	763	183aa	ENSP00000442484.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H2A2 F5H4L1 F5H4Y6 F5H6I1 F5H7J2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000543181.1	SPPL3-006	663	118aa	ENSP00000446088.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4L1 F5H4Y6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000543608.1	SPPL3-005	636	164aa	ENSP00000437603.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H2A2 F5H4L1 F5H4Y6 F5H6I1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000540091.1	SPPL3-008	531	66aa	ENSP00000444821.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4Y6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000543854.1	SPPL3-009	508	102aa	ENSP00000439390.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H2A2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000392495.3	SPPL3-002	2265	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000534966.1	SPPL3-007	868	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000545209.1	SPPL3-004	797	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 4,148 bps, Translation length: 384 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8TCT6

CCDS

This transcript is a member of the Human CCDS set: CCDS9208

Version

ENST00000353487.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000402980 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000353487.2 SPPL3-001

Summary