Transcript: ENST00000285968.6 NUP205-001

Description

nucleoporin 205kDa [Source:HGNC Symbol;Acc:18658]

Gene Synonyms

C7orf14, KIAA0225

Location

Chromosome 7: 135,242,667-135,333,505 forward strand.

About this transcript

This transcript has 43 exons, is annotated with 6 domains and features, is associated with 40076 variant alleles and maps to 1686 oligo probes.

Gene

This transcript is a product of gene ENSG00000155561.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000285968.6	NUP205-001	6266	2012aa	ENSP00000285968.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34759	Q6DKH1 Q6P486 Q92621	NM_015135.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440390.2	NUP205-201	1638	249aa	ENSP00000401983.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ET25	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000472132.1	NUP205-015	553	184aa	ENSP00000475665.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000477620.1	NUP205-007	1800	273aa	ENSP00000475318.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000490439.1	NUP205-013	653	42aa	ENSP00000475877.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000463247.1	NUP205-012	570	71aa	ENSP00000475539.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000489493.1	NUP205-010	550	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000607647.1	NUP205-016	4518	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461255.1	NUP205-008	1447	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462316.1	NUP205-011	571	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000491089.1	NUP205-014	553	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 43, Coding exons: 43, Transcript length: 6,266 bps, Translation length: 2,012 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q92621

CCDS

This transcript is a member of the Human CCDS set: CCDS34759

Version

ENST00000285968.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000340358 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000285968.6 NUP205-001

Summary